PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31622
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 89aa    MW: 9875.94 Da    PI: 7.6852
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31622genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.9e-101660344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W++ E +l+ +a + +G g   +W +++r mg ++t+ +++ ++
         EMT31622 16 TWSAKENKLFEEALAYHGEGtpdRWLKVSRAMGGTKTAAEVRRHY 60
                     5*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.1E-71366IPR001005SANT/Myb domain
PfamPF002495.2E-81660IPR001005SANT/Myb domain
SuperFamilySSF466894.19E-121672IPR009057Homeodomain-like
CDDcd001673.51E-51660No hitNo description
Gene3DG3DSA:1.10.10.606.9E-41763IPR009057Homeodomain-like
PROSITE profilePS500906.5391764IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSVSGSSSR GGDDATWSAK ENKLFEEALA YHGEGTPDRW LKVSRAMGGT KTAAEVRRHY  60
EILVDDIKLI ESGRVSFPKY KDNTQGPWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-23881274RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-125HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569501.15e-37PREDICTED: protein RADIALIS-like 3
SwissprotQ58FS33e-24RAD_ANTMA; Transcription factor RADIALIS
TrEMBLM8CVD75e-61M8CVD7_AEGTA; Uncharacterized protein
STRINGMLOC_75951.16e-40(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-23RAD-like 1